Rice Tos17 Insertion Mutant Database

This page is an in silico rice mutant screening page by BLAST search against flanking sequences* from our mutant lines induced by rice retrotransposon Tos17*.
You are also able to browse through information about not only insertion points on the rice genome but also phenotype of each mutant line.

Frequencies of primer sequence in the rice genome are now shown on the result of Primer3 (2009-09-10 Akio).
I made new programs for insertion points of Tos17, SNPs and SVs detection. They may be useful for you. Click here [TIF], [PED] and TE finding program from NGS data. [TEF]
Somaclonal Variation in Rice: Retrotransposon Tos17 and Structural Variation with NGS Analysis (Book Chapter) NEW

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National Agriculture and Food Research Organization, Japan.